Publications

Representative Publications:

 

Jun Xiao, Run Jin, Xiang Yu, Max Shen, John D Wagner, Armaan Pai1, Claire Song, Michael Zhuang, Samantha Klasfeld, Chongsheng He, Alexandre M Santos, Chris Helliwell, Jose L Pruneda-Paz, Steve A Kay, Xiaowei Lin, Sujuan Cui, Meilin Fernandez Garcia, Oliver Clarenz, Justin Goodrich, Xiaoyu Zhang, Ryan S Austin, Roberto Bonasio & Doris Wagner. Cis and trans determinants of epigenetic silencing by Polycomb repressive complex 2 in Arabidopsis. Nature Genetics 2017 Aug 21. doi: 10.1038/ng.3937

 

Fourquin C, Beauzamy L, Chamot S, Creff A, Goodrich J, Boudaoud A, Ingram G. Mechanical stress mediated by both endosperm softening and embryo growth underlies endosperm elimination in Arabidopsis seeds. Development. 2016 Sep 15; 143(18) 3300-3305. DOI: 10.1242/dev.137224. Epub 2016 Jun 10. PMID: 27287798

 

Zhang Y, Li X, Goodrich J, Wu C, Wei H, Yang S, Feng X. Reduced function of the RNA-binding protein FPA rescues a T-DNA insertion mutant in the Arabidopsis ZHOUPI gene by promoting transcriptional read-through. Plant Mol Biol. 2016 Jul; 91(4-5):549-561. DOI:10.1007/s11103-016-0487-2. Epub 2016 May 10. PMID: 27164978

 

Liang SC, Hartwig B, Perera P, Mora-García S, de Leau E, Thornton H, de Lima Alves F, Rappsilber J, Yang S, James GV, Schneeberger K, Finnegan EJ, Turck F, Goodrich J. Kicking against the PRCs - A Domesticated Transposase Antagonises Silencing Mediated by Polycomb Group Proteins and Is an Accessory Component of Polycomb Repressive Complex 2. PLoS Genetics (2015) 11:e1005660. doi: 10.1371/journal.pgen.1005660. PMID:26895156

 

Müller-Xing R, Schubert D, Goodrich J. Non-inductive conditions expose the cryptic bract of flower phytomeres in Arabidopsis thaliana. Plant Signal Behav. 2015;10(4):e1010868. doi:10.1080/15592324.2015.1010868. PMID: 25924005

 

Ikeuchi M, Iwase A, Rymen B, Harashima H, Shibata M, Ohnuma M, Breuer C, Morao AK, de Lucas M, De Veylder L, Goodrich J, Brady SM, Roudier F, Sugimoto K. PRC2 represses dedifferentiation of mature somatic cells in Arabidopsis. Nat Plants. 2015 Jun 29;1:15089. DOI: 10.1038/nplants.2015.89. PMID: 27250255

 

Van Hautegem T, Waters AJ, Goodrich J, Nowack MK. Only in dying, life: programmed cell death during plant development. Trends Plant Sci. 2015 Feb;20(2):102-113. DOI: 10.1016/j.tplants.2014.10.003. Epub 2014 Nov 19. Review.PMID:25457111

 

Müller-Xing R, Clarenz O, Pokorny L, Goodrich J, Schubert D. Polycomb-Group Proteins and FLOWERING LOCUS T Maintain Commitment to Flowering in Arabidopsis thaliana.Plant Cell. 2014 Jun 10;26(6):2457-2471. [Epub ahead of print]. DOI:10.1105/tpc.114.123323. PMID:24920331

 

Lee,E., Lucas,J.R., Goodrich,J., and Sack,F.D. (2014). Arabidopsis guard cell integrity involves the epigenetic stabilization of the FLP and FAMA transcription factor genes. Plant J. 78, 566-577. DOI:10.1111/tpj.12516. PMID:24654956

 

Waters, A., Creff, A., Goodrich, J., and Ingram, G. (2013). "What we’ve got here is failure to communicate": Zou mutants and endosperm cell death in seed development. Plant Signal Behav. Mar 26;8(6). DOI:10.4161/psb.24368. PMID: 23531691

 

Xing Q, Creff A, Waters A, Tanaka H, Goodrich J, Ingram GC. ZHOUPI controls embryonic cuticle formation via a signalling pathway involving the subtilisin protease ABNORMAL LEAF-SHAPE1 and the receptor kinases GASSHO1 and GASSHO2. Development. 2013 Feb;140(4):770-779. DOI: 10.1242/dev.088898. Epub 2013 Jan 14. PMID: 23318634

 

Lopez-Vernaza M, Yang S, Müller R, Thorpe F, de Leau E, Goodrich J. Antagonistic roles of SEPALLATA3, FT and FLC genes as targets of the polycomb group gene CURLY LEAF. PLoS One. 2012;7(2):e30715. DOI: 10.1371/journal.pone.0030715. Epub 2012 Feb 17. PMID: 22363474

 

Liu X, Kim YJ, Müller R, Yumul RE, Liu C, Pan Y, Cao X, Goodrich J, Chen X.AGAMOUS terminates floral stem cell maintenance in Arabidopsis by directly repressing WUSCHEL through recruitment of Polycomb Group proteins. Plant Cell. 2011 Oct;23(10):3654-3670. DOI: 10.1105/tpc.111.091538. Epub 2011 Oct 25. PMID:22028461

 

Farrona S, Thorpe FL, Engelhorn J, Adrian J, Dong X, Sarid-Krebs L, Goodrich J, Turck F. Tissue-specific expression of FLOWERING LOCUS T in Arabidopsis is maintained independently of polycomb group protein repression. Plant Cell. 2011 Sep;23(9):3204-3214. DOI: 10.1105/tpc.111.087809. Epub 2011 Sep 13. PMID:21917549

 

Müller, R and Goodrich J. (2011).Footprints of Winter. The Scientist 25:57 

 

Müller R, Goodrich J. Sweet memories: epigenetic control in flowering. F1000 Biol Rep. 2011;3:13. DOi: 10.3410/B3-13. Epub 2011 Jun 1. PMID:21876724

 

Bouyer D, Roudier F, Heese M, Andersen ED, Gey D, Nowack MK, Goodrich J, Renou JP, Grini PE, Colot V, Schnittger A. Polycomb repressive complex 2 controls the embryo-to-seedling phase transition. PLoS Genet. 2011 Mar;7(3):e1002014. DOI: 10.1371/journal.pgen.1002014. Epub 2011 Mar 10. PMID:21423668

 

Finnegan E.J., Bond DM, Buzas DM, Goodrich J, Helliwell CA, Tamada Y, Yun JY, Amasino RM, Dennis ES. Polycomb proteins regulate the quantitative induction of VERNALIZATION INSENSITIVE 3 in response to low temperatures. Plant J. 2011 Feb;65(3):382-391. DOI: 10.1111/j.1365-313X.2010.04428.x. Epub 2010 Dec 13. PMID:21265892

 

Schatlowski N, Stahl Y, Hohenstatt ML, Goodrich J, Schubert D. The CURLY LEAF interacting protein BLISTER controls expression of polycomb-group target genes and cellular differentiation of Arabidopsis thaliana. Plant Cell. 2010 Jul;22(7):2291-2305. DOI: 10.1105/tpc.109.073403. Epub 2010 Jul 20. PMID:20647345

 

Yang S, Johnston N, Talideh E, Mitchell S, Jeffree C, Goodrich J, Ingram G.The endosperm-specific ZHOUPI gene of Arabidopsis thaliana regulates endosperm breakdown and embryonic epidermal development. Development. 2008 Nov;135(21):3501-3509. DOI: 10.1242/dev.026708. PMID:18849529

 

Schatlowski N, Creasey K, Goodrich J, Schubert D. Keeping plants in shape: polycomb-group genes and histone methylation. Semin Cell Dev Biol. 2008 Dec;19(6):547-553. DOI: 10.1016/j.semcdb.2008.07.019. Epub 2008 Jul 31. Review. PMID:18718547

 

 

Zhang X, Clarenz O, Cokus S, Bernatavichute YV, Pellegrini M, Goodrich J, Jacobsen SE. Whole-genome analysis of histone H3 lysine 27 trimethylation in Arabidopsis. PLoS Biol. 2007 May;5(5):e129. DOI: 10.1371/journal.pbio.0050129

 

Schubert D, Primavesi L, Bishopp A, Roberts G, Doonan J, Jenuwein T, Goodrich J. Silencing by plant Polycomb-group genes requires dispersed trimethylation of histone H3 at lysine 27. EMBO J. 2006 Oct 4;25(19):4638-4649. Epub 2006 Sep 7. DOI:10.1038/sj.emboj.7601311.  PMID:16957776

 

Makarevich G, Leroy O, Akinci U, Schubert D, Clarenz O, Goodrich J, Grossniklaus U, Köhler C. Different Polycomb group complexes regulate common target genes in Arabidopsis. EMBO Rep. 2006 Sep;7(9):947-952. Epub 2006 Jul 28. DOI: 10.1038/sj.embor.7400760. PMID: 16878125

 

Schubert D, Clarenz O, Goodrich J. Epigenetic control of plant development by Polycomb-group proteins.Curr Opin Plant Biol. 2005 Oct;8(5):553 -561. DOI:10.1016/j.pbi.2005.07.005. PMID:16043386

 

Goodrich J, Wiener P. A walk from the wild side: the genetics of domestication of livestock and crops. Bioessays. 2005 May; 27(5):574-576.  DOI:10.1002/bies.20228. PMID:15832376.

 

Lindroth AM, Shultis D, Jasencakova Z, Fuchs J, Johnson L, Schubert D, Patnaik D, Pradhan S, Goodrich J, Schubert I, Jenuwein T, Khorasanizadeh S, Jacobsen SE. Dual histone H3 methylation marks at lysines 9 and 27 required for interaction with CHROMOMETHYLASE3. EMBO J. 2004 Oct 27;23(21):4286-4296. Epub 2004 Sep 30. Erratum in: EMBO J. 2011 May 4;30(9):1874.DOI:10.1038/sj.emboj.7600430.

 

Chanvivattana Y, Bishopp A, Schubert D, Stock C, Moon YH, Sung ZR, Goodrich J. Interaction of Polycomb-group proteins controlling flowering in Arabidopsis. Development. 2004 Nov;131(21):5263-5276. Epub 2004 Sep 29. DOI:10.1242/dev.01400. PMID:15456723

 

Narita NN, Moore S, Horiguchi G, Kubo M, Demura T, Fukuda H, Goodrich J, Tsukaya H. Overexpression of a novel small peptide ROTUNDIFOLIA4 decreases cell proliferation and alters leaf shape in Arabidopsis thaliana. Plant J. 2004 May;38(4):699-713.DOI:10.1111/j.1365313X.2004.02078.x

 

Schubert D, Goodrich J. Plant epigenetics: MEDEA's children take centre stage. Curr Biol. 2003 Aug 19;13(16):R638-640. Review. No abstract available. PMID:12932340

 

Goodrich J, Tweedie S. Remembrance of things past: chromatin remodeling in plant development.Annual Review of  Cell and Developmental Biology. 2002;18:707-746. Epub 2002 Apr 2. Review.  DOI:10.1146/annurev.cellbio.18.040202.114836

 

Eckardt N.A., Araki T., Benning C., Cubas P., Goodrich J., Jacobsen S.E., Masson P., Nambara E., Simon R., Somerville S. and Wasteneys G. (2001). Arabidopsis Research 2001. Plant Cell 13:1973-1982.  PMC1464711

 

Spillane, C., MacDougall, C.M., Stock, C.P., Vielle-Calzada, J.-P., Köhler, C., Nunes, S., Grossniklaus, U. and Goodrich, J. (2000). Interaction of the Arabidopsis Polycomb group proteins FIE and MEA mediates their common phenotypes. Current Biology 10:1535-1538. PMID:11114524 

 

Goodrich, J., Puangsomlee, P., Long, D., Martin, M., Meyerowitz, E.M and G. Coupland. 1997. A Polycomb-group gene regulates homeotic gene expression in plants. Nature, 386: 44-51. DOI:10.1038/386044a0